4/9/2023 0 Comments View sam file linux![]() It is widely used for storing data, such as nucleotide sequences, generated by next generation sequencing technologies, and the standard has been broadened to include unmapped sequences. The name of SAM came from Gabor Marth from University of Utah, who originally had a format under the same name but with a different syntax more similar to a BLAST output. ![]() The overall TAB-delimited flavour of the format came from an earlier format inspired by BLAT’s PSL. It was developed when the 1000 Genomes Project wanted to move away from the MAQ mapper format and decided to design a new format. Sequence Alignment Map (SAM) is a text-based format originally for storing biological sequences aligned to a reference sequence developed by Heng Li and Bob Handsaker et al.
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